Free Software Links
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Primer 3
RepeatMasker (a.k.a. RepeatHamster)
Hey! Lab software
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Stop!
Hammertime!
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For more links visit the Links page
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| Software Generated by the Hammer Lab
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IMgc Online
The online interface for IMgc. IMgc reads an aligned fasta file and returns the
largest non-recombining block of DNA sequence. This is necessary for downstream
analyses that require datasets with no evidence of recombination (such as Jody Hey's
Isolation-with-Migration (IM) software).
IMgc maximizes the information content of the final dataset (as defined by the user). Users can favour retention of segregating sites relative to individuals, or vice versa. IMgc defaults to an equal weighting of individuals and segregating sites.
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Perl Scripts
IMgc.pl
Reads in a fasta file, and returns either the largest non-recombining
block (by removing data), or multiple non-recombining blocks
(without removing data). This was originally written to generate input for Jody
Hey's Isolation-with-Migration
(IM) software, although is useful for many other tasks as well.
IMgc requires working installations of Perl, BioPerl, and in particular, the
BioPerl::SeqIO module.
Component Files:
Read Me
3.0cMperMB_example.fasta
3.0cMperMB_example.fasta.out
Download all
IMgc components as a .zip file
More from the Hammer lab coming soon!
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